- Binary Classification: a visual refresher (2020)
png,
code
- Techniques for Inhomogeneous Linear PDEs (2019)
pdf
- Conduction in the Heart Wall: Helicoidal Fibers Minimize Diffusion Bias (2018)
Nature Scientific Reports
- Necessary and Sufficient Conditions for Weak Local Variational Extrema (2017) pdf
- Predicting the Geothermal Heat Flux in Greenland: A Machine Learning Approach (2017)
Geophysical Research Letters,
code
- Gradient Boosted Regression Trees, a brief introduction (2017)
pdf
- Elementary Linear Algebra Fact Sheet (2017) pdf
- Measure Theory and Integration (2016) pdf
- Topological Properties of Dynamical Systems (2015) pdf
- A Course in Abstract and Numerical Linear Algebra (2011) pdf
- Bootstrap and Jacknife; Resampling Methods in Estimator Assessment (2010) pdf
- Word-Blot: Sensitive Alignment-free Local Similarity Search with kD-Trees (2018, in preparation)
code
- An Evolutionary Model for the Emergence of Scale-Free Biological Networks (2017)
pdf,
code
- Genome Assembly with Long Noisy Reads II (2016)
pdf,
supplements
- Genome Assembly with Long Noisy Reads I (2015) pdf
- Synchronization in Cortical Networks (2016) pdf
- Syntactic Capacities of Songbirds (2016) pdf
- Local Protein Synthesis in Neurons (2016) pdf
- Estimation of Coherence in Local Field Potentials (2016)
pdf,
code
- A Git Branching Model for SaaS Continuous Delivery (2020)
github
- Behavioral Tests for Django, an overview (2019)
gist
- Object Oriented Programming in Python, A Graded Knowledge Check (2019)
gist
biseqt
(code, docs):
Biological sequence analysis toolkit in python: flexible and light C
implementation of standard dynamic programming sequence alignment algorithms,
seed and kmer analysis backed by SQLite.
science-py-env
(docker hub,
code):
a docker base image for scientific computing,
sphinxcontrib-wiki
(pypi,
code,
docs):
a sphinx extension that adds a wiki functionality to sphinx,
rdbmanage.py
(code):
a configurable scheduler/manager for rdiff-backup.
dockergen
(code):
create docker build contexts from predefined configuration snippets.
SiteDiff
(code,
docs):
a tool for comparing two versions of a website (visualized diff for html)
- Chef cookbooks for
Drupal, and
Apache Solr servers.
- A survey of frameworks for end-to-end testing of web applications:
gist.
- Networking with docker containers using Linux kernel transparent proxies:
gist.
- A guide for handling MS Access MDB files in Linux with PHP5 PDO and ODBC:
gist.
