• Binary Classification: a visual refresher (2020) png, code
  • Techniques for Inhomogeneous Linear PDEs (2019) pdf
  • Conduction in the Heart Wall: Helicoidal Fibers Minimize Diffusion Bias (2018) Nature Scientific Reports
  • Necessary and Sufficient Conditions for Weak Local Variational Extrema (2017) pdf
  • Predicting the Geothermal Heat Flux in Greenland: A Machine Learning Approach (2017) Geophysical Research Letters, code
  • Gradient Boosted Regression Trees, a brief introduction (2017) pdf
  • Elementary Linear Algebra Fact Sheet (2017) pdf
  • Measure Theory and Integration (2016) pdf
  • Topological Properties of Dynamical Systems (2015) pdf
  • A Course in Abstract and Numerical Linear Algebra (2011) pdf
  • Bootstrap and Jacknife; Resampling Methods in Estimator Assessment (2010) pdf
  • Word-Blot: Sensitive Alignment-free Local Similarity Search with kD-Trees (2018, in preparation) code
  • An Evolutionary Model for the Emergence of Scale-Free Biological Networks (2017) pdf, code
  • Genome Assembly with Long Noisy Reads II (2016) pdf, supplements
  • Genome Assembly with Long Noisy Reads I (2015) pdf
  • Synchronization in Cortical Networks (2016) pdf
  • Syntactic Capacities of Songbirds (2016) pdf
  • Local Protein Synthesis in Neurons (2016) pdf
  • Estimation of Coherence in Local Field Potentials (2016) pdf, code
  • A Git Branching Model for SaaS Continuous Delivery (2020) github
  • Behavioral Tests for Django, an overview (2019) gist
  • Object Oriented Programming in Python, A Graded Knowledge Check (2019) gist
  • biseqt (code, docs): Biological sequence analysis toolkit in python: flexible and light C implementation of standard dynamic programming sequence alignment algorithms, seed and kmer analysis backed by SQLite.
  • science-py-env (docker hub, code): a docker base image for scientific computing,
  • sphinxcontrib-wiki (pypi, code, docs): a sphinx extension that adds a wiki functionality to sphinx,
  • rdbmanage.py (code): a configurable scheduler/manager for rdiff-backup.
  • dockergen (code): create docker build contexts from predefined configuration snippets.
  • SiteDiff (code, docs): a tool for comparing two versions of a website (visualized diff for html)
  • Chef cookbooks for Drupal, and Apache Solr servers.
  • A survey of frameworks for end-to-end testing of web applications: gist.
  • Networking with docker containers using Linux kernel transparent proxies: gist.
  • A guide for handling MS Access MDB files in Linux with PHP5 PDO and ODBC: gist.
©2020 | Amir Kadivar | [name]@amirkdv.ca | currently @ Streamline Genomics